Fundamental plots for electrophysiological data
1
About
Citation
License
2
Preface
2.1
R packages & versioning
2.2
%not_in%
3
Spike sorting
3.1
Spike2
3.1.1
File naming conventions:
3.1.2
Spike sorting with Spike2
3.2
Neuralynx
4
Quick version - condensed plots
5
Data wrangling
5.1
Import example file and metadata
5.1.1
Identify files to import
5.1.2
Data import and preliminary labeling
5.2
Organizing replicates (required) and binning (optional)
5.3
Data export
6
Raster and mean spike rate plots
6.1
Data sets
6.2
Raster plot
6.3
Mean spike rate plots
6.4
Export to PDF
7
Direction tuning
7.1
Data import and baseline rate measurement
7.2
Using the full 3-sec motion epoch
7.3
Using 40-200ms (“initial transient”)
7.4
Using 1500-3000ms (“steady state”)
7.5
Using 0-500 ms (arbitrary epoch length)
7.6
Construct a multi-panel plot
8
Spatiotemporal tuning
9
Raw data and spike sorted traces
10
Histological verification
10.0.1
Direct embedding method:
10.0.2
Hotlinking method:
Published with bookdown
Fundamental plots for electrophysiological data
10
Histological verification
Test post, please ignore
10.0.1
Direct embedding method:
Flowchart
10.0.2
Hotlinking method:
Flowchart link